DreEX0052882 @ danRer10
Exon Skipping
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6109173-6122530:+
Coord C1 exon
chr18:6109173-6109218
Coord A exon
chr18:6112687-6112758
Coord C2 exon
chr18:6122451-6122530
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTGCCCTGTGTGTTTCTCAGGTG
3' ss Score
11.06
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
AATGGAGGTGTAGTTCAGACGTATGTGGACGGTTGCTGTAAGACGT
Seq A exon
GTGCTGGACTCGGTTTGTTGCCTTTTTCCGTTAGTCCAGTTACACCCACTGCTAGTACTAACTGTGACTCAG
Seq C2 exon
GCAAAGAAGATGGTAAAACCTGCAAAAGAGTCGCCATCAGAACCACCATCAGAAAAGATGACTGCAGAAGCAATGCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750-'54-53,'54-52,55-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000092804fB4447
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGTGTAGTTCAGACGT
R:
TGCTTCTGCAGTCATCTTTTCTGA
Band lengths:
117-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]