HsaEX6068018 @ hg19
Exon Skipping
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80765799-80772859:+
Coord C1 exon
chr12:80765799-80765844
Coord A exon
chr12:80770903-80770982
Coord C2 exon
chr12:80771628-80772859
Length
80 bp
Sequences
Splice sites
3' ss Seq
TACATTTTATATTTTATCAGGCA
3' ss Score
6.65
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
AATGAAGGGATTGTGAAGCTTTATAATGAAGGCTGTTGCAAGATCT
Seq A exon
GCAAACGAGAAGAAAGAATATGCCAGAAAGTGATCATTAAATCGGTCATAAGGAAACAGGACTGTATGAGCCAAAGCCCT
Seq C2 exon
ATAAATGTTGCATCTTGTGACGGCAAATGCCCATCAGCTACCATATATAACATCAATATTGAAAGTCACCTAAGATTCTGCAAGTGTTGTCGTGAAAATGGAGTACGAAACTTGTCTGTGCCTCTGTATTGCTCAGGAAATGGCACTGAAATTATGTACACTCTCCAGGAACCCATAGACTGTACGTGCCAGTGGAATTAAACCCTTGGGTTCCAAGAGCTCTATACAACATCATAACGTCAGATAGAATTAACTTTTATTGCTATTACTTAGGCATGTGGCAGATTTATGCTGTTTAACAATACTGTATTTTTCAGACTTGGAATGTGGAAATTTAGCAATTTGTACAAAATATATACAGTTTCAATAGCAAAATTAAATTTATTGCTTTACTCTATTTTAGAAAATCAAATGACTGTAAGTTGTTCAGCTGAAATGCTGTTATGTATTTAATTACAACTTGGTGCAGATACAGTATATTCTCATCAACTGGAAGGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'46-50,'46-49,47-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGCTGTTGCAAGATCT
R:
TCAGTGCCATTTCCTGAGCAA
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)