DreEX0052883 @ danRer10
Exon Skipping
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6109173-6125168:+
Coord C1 exon
chr18:6109173-6109218
Coord A exon
chr18:6122451-6122530
Coord C2 exon
chr18:6124260-6125168
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGCA
3' ss Score
8.85
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AATGGAGGTGTAGTTCAGACGTATGTGGACGGTTGCTGTAAGACGT
Seq A exon
GCAAAGAAGATGGTAAAACCTGCAAAAGAGTCGCCATCAGAACCACCATCAGAAAAGATGACTGCAGAAGCAATGCACCT
Seq C2 exon
GTGACCGTGTACTCATGCGATGGCAAATGTCCATCCGCCACCATCTTTAACTTCAACATTAACAGTCACGCACGTTTCTGCAAGTGCTGCCGAGAAAACGGCCTTCAGAACCGCATCATACAGCTGTACTGCACTCGAAACGCCACAACGGTGGACTATTACTACCAGGAGCCCATGGACTGCTCATGCCAGTGGAACTGATCTACACACAGGCCTGACTGTGACACATTATTCAATACAGTATCTGTATAACTGCAAAACTACTAACACCATCACTGTATTTGTTTTCTTTTATATCTGTAACTTATGTGTAAGTATGCTAATCACACGTTTATTAGAATAAGAACAAGAAAGGAACTGTTAAATTGACATTGTTTTCATTTTAAACTATTAACATTTGATAAGAGAGTACTTTAAGATAGTATTATAAGACTCCAAATACATTTTAAGCATGTTACCTGTTAACCAAACGCTTTATTTAAATGAATCCTTGTGCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750-'54-54,'54-53,56-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATGTGGACGGTTGCTGTA
R:
CGTTTCGAGTGCAGTACAGCT
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]