RnoEX6031456 @ rn6
Exon Skipping
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51930243-51935142:+
Coord C1 exon
chr7:51930243-51930288
Coord A exon
chr7:51933890-51933969
Coord C2 exon
chr7:51934942-51935142
Length
80 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTTTTCTTTTCCAGGCA
3' ss Score
11.67
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AATGAAGGCATTGTAAAGTTTTATAATGAAGGCTGTTGCAAGATCT
Seq A exon
GCAAACGAGAAGAAAGAATATGCCAGAAACTGATCATTAAATCGATCATAAAGAAACAGGACTGTGTAAGCCAGAGCTCT
Seq C2 exon
ATTAGTGTGGCATCTTGTGATGGAAAATGCCCATCAGCTACCATATATAACATCAACGTCGAAAGTCACCTGAGGTTCTGCAAGTGCTGTCGTGAAAATGGAGTGCGGAACCTGACGGTGCCGCTGCACTGCTCGGGAAATGGCACTGAGGTTATGTACACCCTCCAGGAGCCTATAGACTGCACGTGCCAGTGGAATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316-'64-71,'64-70,66-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000043774fB10158
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGCTGTTGCAAGATCT
R:
TAACCTCAGTGCCATTTCCCG
Band lengths:
175-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]