GgaEX6001391 @ galGal3
Exon Skipping
Gene
ENSGALG00000010342 | OTOGL
Description
NA
Coordinates
chr1:41727045-41733260:+
Coord C1 exon
chr1:41727045-41727090
Coord A exon
chr1:41731317-41731396
Coord C2 exon
chr1:41733060-41733260
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCCATATTTTATCAGGCA
3' ss Score
7.95
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
AATGGAGGAATTGTGCAGACGTACAATGATGGCTGCTGCAAGACCT
Seq A exon
GCAAAAGGGAAGAAAGGATTTGCCAGAAAATGACAATCAGGACAACTATAAGAAAAAATGACTGCATAAGTCAAAGCCCG
Seq C2 exon
ATAAATGTGGCTTCTTGTGATGGAAAATGCCCATCTGCAACAATTTTCAATGTCAATATTGATAGCCATTTAAGATTCTGTAAATGTTGTCGAGAACATGGAACGCGCAATCTGACTGTGCCTCTACACTGCTCAGGAAACGGCACTGAAATTATGTATGTCATTCAAGAGCCTGTAGACTGCTCATGCCAATGGAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342-'64-70,'64-69,65-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGATGGCTGCTGCAAGA
R:
GCCGTTTCCTGAGCAGTGTAG
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]