DreEX0053389 @ danRer10
Exon Skipping
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51040024-51044220:-
Coord C1 exon
chr17:51044080-51044220
Coord A exon
chr17:51041828-51041955
Coord C2 exon
chr17:51040024-51040132
Length
128 bp
Sequences
Splice sites
3' ss Seq
AGTGTTGTGTCCTCATGCAGGCA
3' ss Score
7.97
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
GTTTAACATTGACTATTCTCCGCTGGTTGAGGCTCGAGCGGGTCAGACGGCCAAGCTGCAGTGTTCAGTTCTGCCAGTGTCGGCCATACATGCGGTCACTATTCACTGGAGCAGAGCTGGACAGCCACTCAACTCACTCAG
Seq A exon
GCATTCTCAGCACTCGGACGGCACACTGGTGATCAAGCAGCTGACCGCAGATGATTCTGGACTTTATACCTGCACAGTCACAGACGCACAGAAGTTTGAGGAGCGTCAGGTCCAGCTCAGAGTTCTGG
Seq C2 exon
GGGACCTCAGGATCACTAAAGCCCCCATTGATGTGGATGTGGTGCAGGGCAGCACTGCTCAGCTGGCCTGCGTCGTGACTGGAGAAAACGTGAACGTCGGCTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867-'31-32,'31-31,32-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.045 C2=0.027
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(52.8=97.9)
A:
PF0767911=I-set=PD(46.1=93.2)
C2:
PF0767911=I-set=PU(39.1=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGACTATTCTCCGCTGGT
R:
GACCAGCCGACGTTCACG
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]