GgaEX0013684 @ galGal3
Exon Skipping
Gene
ENSGALG00000009315 | PAPLN
Description
NA
Coordinates
chr5:28478204-28479458:-
Coord C1 exon
chr5:28479321-28479458
Coord A exon
chr5:28478827-28478954
Coord C2 exon
chr5:28478204-28478312
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTCTGGTTTTGTCCATCAGACA
3' ss Score
6.88
5' ss Seq
TAGGTACCA
5' ss Score
3.96
Exon sequences
Seq C1 exon
GTTGAGAATGGACAAGAGCGAGCCCTCGGTAGTAGAGGCCAAAGTTGGGGAGAGAGTCAGACTGCCCTGCACAGTGGAAGCATCTCCAGCTCTCACCATTGAGTGGCAGAAAGATGGGCAGCCCCTCTCCCCTCCCAG
Seq A exon
ACACAGACAGCAGTCAGATGGGGCCCTGGTGATCAGCCGGGTTAGCTCTGAGGACGCCGGCTTCTTTACCTGCATCGCCTCAAATGGACGTGACCAGGACCAGCGCCAGGTCCTGCTCCGACCTTTAG
Seq C2 exon
GAGGGCTGAGGATTACTGGTCTTCTGCCAAGCATCAAGGTATCTGAAGGAGAAACTGCTCAACTTCATTGCACAGTGACTGGCAACAATGTGAATATAAGGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315-'27-28,'27-27,28-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(50.6=89.4)
A:
PF0767911=I-set=PD(48.2=90.9)
C2:
PF0767911=I-set=PU(39.1=91.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAATGGACAAGAGCGAGC
R:
GACCACCTTATATTCACATTGTTGCC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]