DreEX0053800 @ danRer10
Exon Skipping
Gene
ENSDARG00000019717 | pbx2
Description
pre-B-cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-000405-5]
Coordinates
chr16:48691969-48701154:+
Coord C1 exon
chr16:48691969-48692063
Coord A exon
chr16:48696655-48696705
Coord C2 exon
chr16:48698716-48701154
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCTCTCTCTGGTAGGAC
3' ss Score
10.27
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GCTCAGGGTCGTTCTCTCTGTCAGGATCAGCTGACTGCTTTCTAGGGGTTCCACCAATGAACGGCGAGCAGCCTCCGTATCACATGGGAGCTCAG
Seq A exon
GACGCTCAATCGCGCTTCTCAGAAAGACTGTATATTACCAGAGAGAGCCGG
Seq C2 exon
ACTAATGGTAACTGGCAGGAGCAGAACTCGCCGCCGTCCGCTGCTTCACCCGGAACTGATCACTCCGTCGACTCAGACTGATGACGTCCACCTCACAGACACGAAAGAATGATGCTCTCTCTTCTACCCAACTGCAGATTTACTTTTCTTCTTAGTTTTATTTTCGTTGGACTTCACGTCGAGCCTCATTCATGAAGCAGAGTTTTACATGTAGATCCTTTATAAATGTATCCTTATTACATTTAATGCAATCATTTACATAAGAAAAGGCCTTGTTTATGAAGCATGTAAATGTGTAAACTGCTTGTAAAATTGCTAAACGACAGTTTAAGCCAAACTATTATTTGGAATAATTTTGTTTTTAACCCGTTTATAGGACACTCATTGAAATACTCGTCAGGAAAAATCCTGGAGCGTCACTAGGGGTTATTATTATTAATTTTTAAGTCACTTTTTAAAGTAATAATTAAAATAATTGTAAGTGAAAAGTATATTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019717_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAGGATCAGCTGACTGC
R:
GATCAGTTCCGGGTGAAGCAG
Band lengths:
139-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]