RnoEX6061550 @ rn6
Exon Skipping
Gene
ENSRNOG00000000440 | Pbx2
Description
PBX homeobox 2 [Source:RGD Symbol;Acc:1303084]
Coordinates
chr20:4360530-4362682:+
Coord C1 exon
chr20:4360530-4360618
Coord A exon
chr20:4360950-4361036
Coord C2 exon
chr20:4361157-4362682
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTGTGCCCTGCAGGTG
3' ss Score
12.49
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GCTCTGGCGGCTCTTTCAATCTCTCAGGATCCGGAGACATGTTTCTGGGGATGCCCGGGCTCAATGGAGATTCCTACCCTGCTTCCCAG
Seq A exon
GTGGAATCTCTCCGACACTCGATGGGGCCAGCGAGCTATGGGGATAACATCGGGGGAGGCCAGATATATAGTCCTCGAGAAATGCGG
Seq C2 exon
GCCAATGGTGGCTGGCAGGAGGCTGTGACCCCGTCCTCGGTGACATCCCCGACAGAGGGACCAGGAAGTGTTCACTCTGACACCTCCAACTGACCTTGCCCCTCAAGGTCACAGGGTTGGGGGCTCCCACCAGGCAACTCTTGAGGAGGACTCTGGGCACCTAGAGGACTAACCCCACAGAAGCACAAAACAGGGCGATTGGGGTTGTGCCCTCCCCAACTAGACACTCGGTGCTGGGGTGCTGACTACATGGCAGGGAGAGTGGGGTGTCTCCGTTTCTTTTCTCCCCCTCCACGAAAAACAGATACTTATTTCTCAGATATCTCTCTTAAATCTACAACGTAATGCCAATTGTGTTTGGCTTGGGCTCCCCCTACTTCTATTCCCCACCCCACTTGTATACTCTGGAATCTGAAGACGTCAGCCCTGCCCGACCCAGAGATGCCAAAAATGGGGACTCTTGGACAGAGGCCCTGGGACGACACCCCCTCCCCCATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000440-'10-15,'10-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.931 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGCTCTTTCAATCTCTCA
R:
GCAAGGTCAGTTGGAGGTGTC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]