GgaEX6015656 @ galGal3
Exon Skipping
Gene
ENSGALG00000000972 | F1P3W1_CHICK
Description
NA
Coordinates
chr17:10542831-10547883:+
Coord C1 exon
chr17:10542831-10542943
Coord A exon
chr17:10543752-10543841
Coord C2 exon
chr17:10546321-10547883
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCTCTTACTTTAAGGTG
3' ss Score
9.62
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAGGGGTCCCAAGTCGGAGCCAATGTGCAGTCACAG
Seq A exon
GTGGATACCCTGCGTCATGTTATCAATCAGACGGGAGGATACAGTGATGGCTTGGGAGGAAATTCACTGTACAGTCCACATAATTTAAAT
Seq C2 exon
GCTAATGGAGGCTGGCAGGACGCAACTACTCCATCTTCTGTGACTTCCCCTACAGAAGGGCCGGGAAGTGTGCACTCTGATACCTCTAACTAATCTCCTAGCAACACTTTTTCCCTGAGCTGAGATGCCTTCATCAGCGCAGTCAGAGTCGCAGGAGAAAAAGGAAAGAATTTTTTTGTAGCCAACCACCTACAGCTTTACTGTAAAACCTTGTCTTACTAGAAAACTTGGTAAATCTGTTTTTTAAAGGTATCATAATCATTTGTATTTATACTTAAAACACACAATGTTAAAAAGCACTTTATCCAATTGGGCCAAGATTTAGCATTGTTTGTAGCCCTGTTACTATTTTATCATAATTTATTATCGGCGATTTTAACAGTGTCGGTCTAACAGTTGCCAATTACTTGGCCTTAAGGGTAAAAGTACAGTACAAGCTTAACCTCAAGAGCAAGAGCGGGCACAAAGGAACAGCTCACCTGAATCTCAACTGCGTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000972-'9-11,'9-9,10-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=0.967 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCTTACCAGGGGTCCCA
R:
AGGCATCTCAGCTCAGGGAAA
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]