RnoEX6016526 @ rn6
Exon Skipping
Gene
ENSRNOG00000022162 | Pbx3
Description
PBX homeobox 3 [Source:RGD Symbol;Acc:1307198]
Coordinates
chr3:13240999-13246402:-
Coord C1 exon
chr3:13246290-13246402
Coord A exon
chr3:13245413-13245502
Coord C2 exon
chr3:13240999-13242537
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCATCTCACTTCTAGGTG
3' ss Score
11.91
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAAGGGTCCCAAGTCGGAGCCAATGTGCAGTCACAG
Seq A exon
GTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGACGGCCTTGGAGCAAACTCACTGTACAGTCCGCATAACTTAAAC
Seq C2 exon
GCTAATGGAGGCTGGCAGGACGCAACAACTCCATCTTCTGTGACTTCTCCTACGGAAGGCCCGGGCAGCGTGCACTCGGATACCTCTAACTAATCCTGGCCTCTCCCAGCTGTCATGCCTTGACAAGCGCATTCGGAGCAATAGGAGGAGGAGGGAAGCGTTTTGTAACCCACCACCTACAGCTTTACTGTAAACCCTGTCTTCTTAGAGAACTCGGGAAACCTGTTTTTTAAGGAATCATAACCATTTGTATTTAAACTTAAGACACACGTTTAAAGGAAAGCACTTTATCCGATTAGGCCGAGACGTAACATTGTTGACAGTTCTTAACTGTCTCATCCTAATTTATTATTACATTTTACAGTAATGGTTCCACAGTTGCCAGTTCCTTGGCCTTAAGGGTAAGAAGTACCATCTATGCTAGACCCCAATTATAGAGCAGGCAAGGTTCACCCTGCCTACGCTGAGCCCTGGCGGATTTCCATGCAGGCTCTCATCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022162-'21-17,'21-16,24-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=0.933 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACCAAGGGTCCCAAGTCG
R:
GAATGCGCTTGTCAAGGCATG
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]