BtaEX6046176 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013314 | PBX3
Description
Bos taurus pre-B-cell leukemia homeobox 3 (PBX3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046453]
Coordinates
chr11:96766772-96772227:+
Coord C1 exon
chr11:96766772-96766937
Coord A exon
chr11:96769230-96769319
Coord C2 exon
chr11:96772059-96772227
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTCTCACTTCTAGGTG
3' ss Score
12.31
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTGTCCAACTGGTTTGGCAACAAACGAATCAGGTACAAGAAGAATATTGGCAAGTTTCAGGAAGAAGCCAACCTCTATGCTGCAAAGACAGCCGTGACAGCCGCGCACGCAGTGGCCGCAGCCGTGCAGAACAACCAGACCAACTCGCCCACCACGCCGAATTCTG
Seq A exon
GTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGATGGCCTTGGAGGAAATTCACTGTACAGTCCACATAATTTAAAT
Seq C2 exon
GCTAATGGAGGCTGGCAGGACGCAACAACTCCATCTTCTGTGACTTCTCCTACCGAAGGCCCAGGAAGTGTGCACTCCGATACCTCTAACTAATCTCCGGCAACACTTTTCCCTGAGCTGACATGCCTTGATCCGTGCATTCAGAGCAATAGGAGGAAAAGGAAAGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013314-'12-12,'12-11,14-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=0.867 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=23.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAACCAGACCAACTCGC
R:
AATGCACGGATCAAGGCATGT
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]