MmuEX6100705 @ mm9
Exon Skipping
Gene
ENSMUSG00000038718 | Pbx3
Description
pre B cell leukemia homeobox 3 [Source:MGI Symbol;Acc:MGI:97496]
Coordinates
chr2:34026977-34032381:-
Coord C1 exon
chr2:34032269-34032381
Coord A exon
chr2:34031385-34031474
Coord C2 exon
chr2:34026977-34028493
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCGTCTCACTTCTAGGTG
3' ss Score
11.91
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAAGGGTCCCAAGTCGGAGCCAATGTGCAGTCACAG
Seq A exon
GTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGACGGCCTTGGAGCAAACTCACTGTACAGTCCACATAACTTAAAC
Seq C2 exon
GCTAATGGAGGCTGGCAGGACGCAACAACTCCATCTTCTGTGACTTCTCCTACGGAAGGCCCGGGCAGTGTGCACTCGGATACCTCTAACTAATCCCCGGCGCTTTCCCAGCTGACATGCCTTGATAAGCGCATTTGGAGCACTAGGAGAAGGAAAGCGTTTGTAACCCACCACCTACAGCTTTACTGTAACCCTGTCTTCTTAGAGAACTCGGGAAACCTGTTTTTTAAGGAATCATAATCATTTGTATTTAAACTTAAGACACACGTTTAAAAAGAAAGCACTTTATCCAATTAGGCCAAGATGTAACATTGTTGACACTTCTTTAACTGTTTCATCCTAATTTATTATGGGTCTTTTACATTAATGGTTCCACAGTTGCCAGTTCCTTGGCCTTAAGGGTAAGAAGTACCATCTATGCTAGACCCCAATTATAGAGCAGGCAAGGTTCACCCTGCCTAAGCTGAACCCTTGCGGATTTCCATGCAGGCTCTCATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038718-'13-15,'13-14,14-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=0.844 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACCAAGGGTCCCAAGTCG
R:
TGCGCTTATCAAGGCATGTCA
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: