DreEX0053814 @ danRer10
Exon Skipping
Gene
ENSDARG00000013615 | pbx3b
Description
pre-B-cell leukemia homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-000405-3]
Coordinates
chr8:33922297-34075707:-
Coord C1 exon
chr8:34075634-34075707
Coord A exon
chr8:33931385-33931474
Coord C2 exon
chr8:33922297-33922413
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTGTGTCCTCTGCAGGTG
3' ss Score
12.38
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAAACATGGGCTCAACTGTCACAGAATGAAGCCAGCCCTCTTCAGTGTGCTCTGCGAGATCAAAGAGAAAACAG
Seq A exon
GTGGATACCCTGCGCCATGTTATCAGTCAGACGGCAGGATACAATGATGTCCTGGGGGGGAATCCCATGTATAGTCCACATGGCTTGAAT
Seq C2 exon
GGTAATGGAGGATGGCAGGACGCTACGACTCCATCCTCTGTGATCTCCCCTACAGAAGGCCCTGGTAGTGTGCACTCTGATACCTCGAACTGACACGCCCCTTCCCAAACTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013615_MULTIEX1-8/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.443 C2=1.000
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.7=100),PF0044324=UCH=FE(8.8=100)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGGCTCAACTGTCACAG
R:
GGCGTGTCAGTTCGAGGTATC
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]