BtaEX6098201 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014421 | PBX2
Description
Bos taurus pre-B-cell leukemia homeobox 2 (PBX2), mRNA. [Source:RefSeq mRNA;Acc:NM_001256883]
Coordinates
chr23:27006213-27006749:+
Coord C1 exon
chr23:27006213-27006301
Coord A exon
chr23:27006423-27006509
Coord C2 exon
chr23:27006637-27006749
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCCTGTTGCCTGCAGGTG
3' ss Score
11.08
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GCTCTGGTGGCTCTTTCAATCTCTCAGGATCCGGTGACATGTTTCTGGGGATGCCCGGGCTCAACGGAGATTCCTACTCTGCCTCCCAG
Seq A exon
GTGGAATCACTCCGACACTCAATGGGGCCAGGGGGCTACGGGGATAACCTCGGGGGAGGCCAGATGTATAGCCCTCGGGAAATGAGG
Seq C2 exon
GCAAATGGCGGCTGGCAGGAGGCTGTGACCCCGTCCTCAGTGACATCCCCGACAGAGGGACCAGGGAGCGTTCATTCGGACACTTCCAACTGATCTTGCCCCTCAGGGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014421-'9-10,'9-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGGATCCGGTGACATGT
R:
TGAGGGGCAAGATCAGTTGGA
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]