MmuEX6077121 @ mm9
Exon Skipping
Gene
ENSMUSG00000034673 | Pbx2
Description
pre B cell leukemia homeobox 2 [Source:MGI Symbol;Acc:MGI:1341793]
Coordinates
chr17:34732210-34734345:+
Coord C1 exon
chr17:34732210-34732298
Coord A exon
chr17:34732573-34732659
Coord C2 exon
chr17:34732769-34734345
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTTGTAACCTGCAGGTG
3' ss Score
11.43
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GCTCTGGCGGCTCTTTCAATCTCTCAGGATCCGGAGACATGTTTCTGGGGATGCCCGGGCTCAATGGCGATTCCTACCCTGCTTCCCAG
Seq A exon
GTGGAATCACTCCGACACTCGATGGGGCCGGGGAGCTACGGGGATAACATTGGGGGAGGTCAGATATACAGTCCTCGAGAAATTCGG
Seq C2 exon
GCCAATGGTGGCTGGCAGGAGGCTGTGACCCCGTCCTCGGTGACATCCCCGACAGAGGGACCAGGAAGTGTTCACTCTGACACCTCCAACTGACCTTGCCCCTCAAGGTCGCGGGGCTAGGGGCTTCCACCAGGCAACTCTTAAGGACTCTGGGCATCTAGAGGACAAACCCCACAGAAGCACAAAACAGAGGGCGATTGGGGTTGTGCCCTCCCCGACCAGACGCTTGGTGCTGGGGTGCTGACAACATGGCAGGGAGAGTGGGGTGTCCCCATTTCTTCTTTCTTTTTTTCGTCTCACCTCTCACCAAAACCAGATACCTATTTCTCAGATGTCTCTCTTAAATCTACAACCTAACACCAGTTGTGTTTGTCTTGGACTCCTCCTACTTCTGTTCCCCACCCCACTTATATACTCTGGAATCTGGAGATGTCAGCCCTGCCCGACCCAGAGATGCCAAAAATGGGGACTCTTGGACAGAGGCCCTGGGCCAACACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034673-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGCTCTTTCAATCTCTCA
R:
GCAAGGTCAGTTGGAGGTGTC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: