DreEX0053795 @ danRer10
Exon Skipping
Gene
ENSDARG00000101131 | pbx1b
Description
pre-B-cell leukemia homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-070424-11]
Coordinates
chr6:2171784-2180702:-
Coord C1 exon
chr6:2180543-2180702
Coord A exon
chr6:2175076-2175165
Coord C2 exon
chr6:2171784-2172286
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTTGTTGTGTTTCAGGTG
3' ss Score
12.21
5' ss Seq
AATGTAAGG
5' ss Score
6.17
Exon sequences
Seq C1 exon
GTGTCTAACTGGTTCGGAAACAAGCGAATCCGATATAAGAAGAACATCGGAAAGTTCCAGGAAGAAGCGAACATGTATGCGGCCAGAACGGCTGTGAACGCGGCGAGCGTTTCTGCACACGGCAGTCAGGCAAACTCTCCGTCCACTCCAAACTCAGCAG
Seq A exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGCCTCGCAGCAAACCAGATGTACAGTCCGCAGGGCATCAAT
Seq C2 exon
GCGAACGGCGGCTGGCAGGATCCCACCACCCCGTCCTCCGTCACCTCACCCACAGAAGGACCCGGCAGCGTCCACTCTGACACCTCCAACTGATCCATCACACACACACTCACACACACACACAGCGTCAGCCCTCGTCTTCATGCTACCTCTCAGATCATCCACAGGTTAGAGCAGACCGACAGACATCAGTCCAGCCTTCATCAGCACCTTCTGTTCACACATCTACCATAGTGCCAAAGTACTTCAATACATCCTTTTAGCATATAATAGACCCGAGAAAGCATTTTAAGAAGGCCTAAATTTAAGATTTGGGGTTTTGAAGTGCATATAAATAAATAATTGCACATTAAATAATGCACTTAATATGATGCATATTTGCTAGAAATAATTGCAAAGGTTTTATTTGTTAACATTAGACTTTAATTACTCTGTAAAGAATGTAATGCCAAAAATTGGTAACACTAACTACATACTAAGAACTATTTATTTAGCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101131_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.867 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=24.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCACTCCAAACTCAGCAG
R:
TAGCATGAAGACGAGGGCTGA
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]