RnoEX0063676 @ rn6
Exon Skipping
Gene
ENSRNOG00000004693 | Pbx1
Description
PBX homeobox 1 [Source:RGD Symbol;Acc:1308213]
Coordinates
chr13:86391517-86432379:-
Coord C1 exon
chr13:86432220-86432379
Coord A exon
chr13:86424477-86424566
Coord C2 exon
chr13:86391517-86392007
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTCCTCTGTCTAGGTG
3' ss Score
9.68
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
GTATCAAACTGGTTTGGAAATAAGCGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACGGCTGTCACTGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCCACTCCCAACTCAGCGG
Seq A exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGT
Seq C2 exon
GCTAATGGAGGTTGGCAGGATGCTACTACCCCTTCATCAGTGACCTCCCCTACAGAAGGCCCTGGCAGTGTTCACTCTGATACCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCGCAGTTGGGGCAGGGGCAGGAGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCTTCTCTTCTCTTCTTTGGGATGCTATTTCAGCCAATCTGGACACTTCTTTATACTCTCTTCCCTTTTTTTCTGGGTAGAAGCCACCCTTCCCTGCCTCCAGCTATCAGACTGGTTCTGTCATCTTCCCTGGCCCCCGCTCTCTGTTATAGACTCCCTGGTTCCTGCCTTCTATTATTTCACTGAAGGATTTTTTCCCCCCACAATTAGAGAAATTTAAAAAGGAAAGACAAATTACAAAGAAACAATAAACGCGTTTGTATGTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004693_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.773 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=24.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGCCACCAATGTGTCA
R:
GGATGCGATTGCTGGGAGATC
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]