MmuEX6029027 @ mm10
Exon Skipping
Gene
ENSMUSG00000052534 | Pbx1
Description
pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
Coordinates
chr1:168119364-168191437:-
Coord C1 exon
chr1:168191278-168191437
Coord A exon
chr1:168183530-168183619
Coord C2 exon
chr1:168119364-168121480
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTCCTCTGTCTAGGTG
3' ss Score
9.68
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
GTATCAAACTGGTTTGGAAATAAGCGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACGGCTGTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCCAACTCAGCGG
Seq A exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGT
Seq C2 exon
GATATGTCAAGAACCTACTGATCCTCACAAGAACCTACTGTCTCTCTTCTCTTGACTGAAAACAAAAGTCTTCTTCTACCTGACCCGTGGCCTGACTTCTGGAAGAATGCATATGGACTTTCGAAGAAGTCAGAGGATATCTGCTGGCCACTTGTATCAGACAAAACAAGGCTGGTGAGCAGGGAGCTAGCAGATGTTGTAACCAGATGATTGGTACATCGACAGAGTCCCAAAGCAATAACCACTATTCTTTCTCTTCTCCACTAATCCAGCAATCAAATAATCACTCTTGAGCATTTACTGTGTACCACAATATAATATAAAATGTGGTGAGTAGCTAGATATATAAGGTAATCTCTCAACTCTCAAAAAAAGTAATGCATTTACAAAGTAAGAGTTATGCATGTGACAAGACAACTAATCGCATAGGGGAGAGAACATGGTTGCAGGTATAGCATCTCCCACATGTCAGTCACTGTGGGAGGGGTTGCACATGTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052534-'35-22,'35-14,38-22
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.629 C2=NA
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=24.1)
A:
PF0004624=Homeobox=PD(4.1=6.7)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCGCCCTCTACTCCCAAC
R:
AGTGGCCAGCAGATATCCTCT
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types