BtaEX0026035 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013801 | PBX1
Description
pre-B-cell leukemia homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8632]
Coordinates
chr3:4228463-4273375:-
Coord C1 exon
chr3:4273216-4273375
Coord A exon
chr3:4264597-4264686
Coord C2 exon
chr3:4228463-4228555
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTCATCCGTTTAGGTG
3' ss Score
7.64
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
Exon sequences
Seq C1 exon
GTATCAAACTGGTTTGGAAATAAACGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACAGCTGTCACTGCTACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCACCCTCAACTCCCAACTCAGCTG
Seq A exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGT
Seq C2 exon
GCTAATGGAGGTTGGCAGGATGCTACTACCCCTTCATCAGTGACCTCCCCTACAGAAGGCCCTGGCAGTGTTCACTCTGATACCTCCAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013801_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.733 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=24.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAAAACAGCTGTCACTG
R:
GAGGTATCAGAGTGAACACTGCC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development