GgaEX1042243 @ galGal4
Exon Skipping
Gene
ENSGALG00000003429 | PBX1A
Description
pre-B-cell leukemia transcription factor 1 [Source:RefSeq peptide;Acc:NP_990077]
Coordinates
chr8:5190327-5205291:-
Coord C1 exon
chr8:5205132-5205291
Coord A exon
chr8:5196891-5196980
Coord C2 exon
chr8:5190327-5190801
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTGTCGTTGGTCTGTTTAGGTG
3' ss Score
7.27
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
Exon sequences
Seq C1 exon
GTATCAAACTGGTTTGGAAATAAGAGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACGGCTGTCACGGCTACCAATGTGTCAGCCCATGGAAGCCAGGCTAACTCACCCTCAACTCCCAATTCAGCTG
Seq A exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCAAGTCAGATGTATAGTCCGCAGGGCATCAGT
Seq C2 exon
GCTAATGGAGGTTGGCAAGACGCTACTACCCCATCGTCGGTGACCTCCCCCACAGAAGGCCCTGGCAGCGTTCACTCTGATACCTCCAACTGATCTCCCAGCAAATTGCATCCCTGGCTGAGCCAGCCCCGGCGGGGCGGGAGGGGAGGGGGCCTCTCCTAACACCGCAGCAGTCAGACTGGAGGTGAAACCAATCAGCACACAGAAGAAGACTCCTTCTCTTCTCTTCGTCGGGATGCTTTTTTCAGCCAATCTGGACACTTCTTTATACTCTCTTCCCTTTCTTTTCTGGGTAGAAGCCGCTCTCCCCCCCCTTGCCGCCGCCGCCACAACACCTCCCTCCCTCCACCTCCCCACCGAAGGATATTTCGACAGCTAGAAGGATCTTAAGGAGGAAAAGCAAAAAACAACCACCGCCACGCCAACTGAACCAAAAGCAGTGCATGGCCTCGCACTGAGCCAAAACCATACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003429_MULTIEX1-3/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.688 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=24.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGTGTCAGCCCATGGAA
R:
AGGGATGCAATTTGCTGGGAG
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]