DreEX0053790 @ danRer10
Exon Skipping
Gene
ENSDARG00000100494 | pbx1a
Description
pre-B-cell leukemia homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000405-1]
Coordinates
chr2:19049120-19069488:-
Coord C1 exon
chr2:19069379-19069488
Coord A exon
chr2:19065215-19065304
Coord C2 exon
chr2:19049120-19054246
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTCCGGTGTCTGCAGGTG
3' ss Score
10.04
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTTCTGCTGGCTCTTTTAACATGAACTCCGGGGATTTGTTCATGAGTGTTCAGTCTCTGAATGGGGACTCATACCAGGGGGCCCAAGTGGGGGCCAACGTTCAGTCACAG
Seq A exon
GTGGATACTCTTCGCCATGTTATCAGTCAGACAGGAGGATACAGTGAAAGCCTTGCTGCCAGTCAGATATACAGTCCACAGGGCATCAAT
Seq C2 exon
GCAAACGGCGGCTGGCAGGATGCCCCGACACCGTCCTCAGTGACCTCGCCCACAGAAGGACCCGGGAGCGTCCATTCTGACACCTCCAACTGATCCGCTTCATTCATCTTCACCATCTTCAGACTGCTCCACTCCACATCAACACATCCGCAGATCTGGATTACTCTCCATCATGGTCACACACAATCATGCCGTACCACCGTGGAACATTTGGAATACTTTACAAGATTTTAGAAAACAATTATGAATAAAAAAAAAGACAAAAAACAACAACAAAAAAAGATGTGTTTGTACAGTTTTCACAGTGTATTTTAGGTGGCACAGGGCGACTAACTAACCTGTGACTGTTTCAGTCTTATTGAGGCTATTGTTAATGATGGAACAACCAGTCGTCGTGTTTCAATTTAAATGCTTCATTCTACCTCTCAGCAAAAAAAAAAAAAAAAAAAAAAAGGAAAAGAACAATTTTGTTTTCTAAAAAAAAAAAATGTTAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100494_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.600 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGGGACTCATACCAGGGG
R:
GTGGAGCAGTCTGAAGATGGTG
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]