HsaEX0045747 @ hg38
Exon Skipping
Gene
ENSG00000185630 | PBX1
Description
PBX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8632]
Coordinates
chr1:164820072-164851831:+
Coord C1 exon
chr1:164820072-164820184
Coord A exon
chr1:164821537-164821626
Coord C2 exon
chr1:164846584-164851831
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTATTGTTCATCTGTTTAGGTG
3' ss Score
7.72
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
Exon sequences
Seq C1 exon
GTTCTTCCAGTTCTTTTAACATGTCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAATGGGGATTCTTACCAAGGGGCCCAGGTTGGAGCCAACGTGCAATCACAG
Seq A exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGT
Seq C2 exon
GCTAATGGAGGTTGGCAGGATGCTACTACCCCTTCATCAGTGACCTCCCCTACAGAAGGCCCTGGCAGTGTTCACTCTGATACCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCCCAGTTGGGGCAGGGGCAGGAGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCTTCTCTTCTCTTCTTTGGGATGCTATTTCAGCCAATCTGGACACTTCTTTATACTCTCTTCCCTTTTTTTTCTGGGTAGAAGCCACCCTTCCCTGCCTCCAGCTGTCAGCCTGGTTTTCGTCATCTTCCCTGCCCCTGTGCCTCTGTCCTAGACTCCCGGGGTCCCCGCCCTCTCTCATATCACTGAAGGATATTTTCAACAATTAGAGGAATTTAAAGAGGAAAAAAATTACAAAGAAAATAATAAAAGTGTTTGTACGTTTTCATGCTGGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185630-'61-47,'61-43,62-47
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=0.624 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PD(4.1=6.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGAGCGTGCAGTCACTC
R:
GCGATTGCTGGGAGATCAGTT
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development