MmuEX6029027 @ mm9
Exon Skipping
Gene
ENSMUSG00000052534 | Pbx1
Description
pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
Coordinates
chr1:170088514-170121568:-
Coord C1 exon
chr1:170121409-170121568
Coord A exon
chr1:170113661-170113750
Coord C2 exon
chr1:170088514-170088955
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTCCTCTGTCTAGGTG
3' ss Score
9.68
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
GTATCAAACTGGTTTGGAAATAAGCGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACGGCTGTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCCAACTCAGCGG
Seq A exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGT
Seq C2 exon
GCTAATGGAGGTTGGCAGGATGCTACTACCCCTTCATCAGTGACCTCCCCTACAGAAGGCCCTGGCAGTGTTCACTCTGATACCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCGCAGTTGGGGCAGGGCCAGGAGGGAGGGTTTCTCTCCCAACGCTGAAGCGGTCAGACTGGAGGTCGAAGCAATCAGCAAACACAATAAGAGTCTCCTTCTCTTCTCTTCTTTGGGATGCTATTTCAGCCAATCTGGACACTTCTTTATACTCTCTTCCCTTTTTTTCTGGGTAGAAGCCACCCTTCCCTGCCTCCAGCTGTCAGACTGGTTTCTGTCATCTTCCCTGGCCCCTGCTCTCTGTTATAGACGCCCGGTCCCTGCCCTCTATGACTTCACTGAAGGATTTTTTTTTCTTCCACAATTAGAGGAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052534-'6-11,'6-8,9-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.813 C2=1.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(23.0=77.8),PF0004624=Homeobox=PD(21.7=24.1)
A:
PF0157913=DUF19=FE(17.6=100),PF0004624=Homeobox=PD(4.1=6.7)
C2:
PF0157913=DUF19=PD(1.2=6.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGCCACCAATGTGTCA
R:
GGATGCGATTGCTGGGAGATC
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: