DreEX0055712 @ danRer10
Exon Skipping
Gene
ENSDARG00000060946 | pip5kl1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:ZFIN;Acc:ZDB-GENE-060526-248]
Coordinates
chr5:31099889-31100413:-
Coord C1 exon
chr5:31100379-31100413
Coord A exon
chr5:31100229-31100284
Coord C2 exon
chr5:31099889-31100001
Length
56 bp
Sequences
Splice sites
3' ss Seq
TATTGATGTTTTGTATGCAGAAG
3' ss Score
6
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGTTCACAGGATCAAAATAGCAAATCAGAGGAAG
Seq A exon
AAGTACTTTATTGTGATGCAAAGTGTCTTTTACCCTGATGACAGAATCATGGCAAG
Seq C2 exon
GTATGATATAAAGGGCTGCGAGGTGAGCCGGTGGACGGATCCAGCTCCTGAAGGCAGCCACATCATAGTGGTTTTGAAGGATCTGAATTTCGAAGGACAGTTCATTCATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060946_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(3.6=100)
A:
PF0150413=PIP5K=FE(5.9=100)
C2:
PF0150413=PIP5K=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCACAGGATCAAAATAGCA
R:
ACTGTCCTTCGAAATTCAGATCCT
Band lengths:
136-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]