RnoEX0002971 @ rn6
Exon Skipping
Gene
ENSRNOG00000048676 | AABR07051445.1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:NCBI gene;Acc:687758]
Coordinates
chr3:11595916-11597023:+
Coord C1 exon
chr3:11595916-11595950
Coord A exon
chr3:11596041-11596093
Coord C2 exon
chr3:11596911-11597023
Length
53 bp
Sequences
Splice sites
3' ss Seq
CCAACCCCTGTCCCCAGAAGTAC
3' ss Score
-2
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAGTATACAGTTTGCGGGTGGCTCAGGGGAAAAAG
Seq A exon
TACTTCATCATCATGCAGTGCATCTTCTACCCTACCAGCCGCATCTCTGAGAG
Seq C2 exon
GTACGACATCAAGGGTTGTGAAGTAAGCCGCTGGGTGGATCCAGTCCCTGAGGGCAGCCCCCTTCTCTTGGTGCTGAAGGACCTCAACTTTCGAGAAAAGACCATAAAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048676-'6-8,'6-7,7-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(6.1=100)
A:
PF0150413=PIP5K=FE(9.9=100)
C2:
PF0150413=PIP5K=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATACAGTTTGCGGGTGGCT
R:
TGGTCTTTTCTCGAAAGTTGAGGT
Band lengths:
137-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]