MmuEX6100572 @ mm9
Exon Skipping
Gene
ENSMUSG00000046854 | Pip5kl1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:MGI Symbol;Acc:MGI:2448520]
Coordinates
chr2:32434456-32435573:+
Coord C1 exon
chr2:32434456-32434490
Coord A exon
chr2:32434578-32434633
Coord C2 exon
chr2:32435461-32435573
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTCCTGACCCCTGTTCCCAGAAG
3' ss Score
6.69
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCGTATACAGTCTGCGGGTAGCTCAGGGGAAAAAG
Seq A exon
AAGTACTTCATCATCATGCAGTGCATCTTCTACCCTACCAGCCGCATTTCTGAGAG
Seq C2 exon
GTATGACATCAAGGGCTGCAACATAAGCCGCTGGGTAGATCCAGCCCCTGAGGGCAGCCCCCTTGTCTTGGTGCTGAAGGACCTCAACTTTCAAGAAAAGACCATGAGATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046854-'9-11,'9-8,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(4.0=100)
A:
PF0150413=PIP5K=FE(6.6=100)
C2:
PF0150413=PIP5K=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTATACAGTCTGCGGGTAG
R:
TTCTTGAAAGTTGAGGTCCTTCAGC
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: