HsaEX0047714 @ hg19
Exon Skipping
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:HGNC Symbol;Acc:28711]
Coordinates
chr9:130688146-130689610:-
Coord C1 exon
chr9:130689576-130689610
Coord A exon
chr9:130689432-130689487
Coord C2 exon
chr9:130688146-130688258
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGTCCCGGCCCCCAGACG
3' ss Score
9.92
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAGTGCACAGTCTGCGGGTGGACCGGGGAAAGAAG
Seq A exon
ACGTACTTCATCGTCATGCAGAGCGTCTTCTACCCCGCCGGCCGCATCTCCGAGAG
Seq C2 exon
GTATGACATCAAAGGCTGCGAGGTGAGCCGCTGGGTGGATCCCGCCCCTGAGGGCAGCCCCCTTGTTCTGGTGCTGAAGGACCTCAACTTTCAGGGCAAGACCATCAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103-'8-14,'8-12,9-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(4.1=100)
A:
PF0150413=PIP5K=PU(6.8=92.9)
C2:
PF0150413=PIP5K=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGACCGGGGAAAGAAG
R:
CAGGTTGATGGTCTTGCCCTG
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)