DreEX0056001 @ danRer10
Exon Skipping
Gene
ENSDARG00000075265 | plaua
Description
plasminogen activator, urokinase a [Source:ZFIN;Acc:ZDB-GENE-090313-278]
Coordinates
chr13:25166807-25169795:-
Coord C1 exon
chr13:25169655-25169795
Coord A exon
chr13:25169199-25169347
Coord C2 exon
chr13:25166807-25168068
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCTGCATCTGTTTTTAAAGGTA
3' ss Score
8.36
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CTCTGTTGAAGATAGAGGACTGCAATGGACAATGTGCAGTAAAGACAAAAACTGTAAGAACTGCGTGTCTTCCTCCTTTCCAGCAAATGCTTCCTGTTGGATTCTACTGTGAGATTGCTGGTTACGGAAGATATCAAAAGG
Seq A exon
GTACCTTTAAGTTCTCTAGATATCTGAAGCAAACTGAAGTCAAGCTTATTTCCCAAAAAGTTTGCCAGAGAACGTATTACAATAAGGACGAGGTCAATGAAAACATGCTGTGCGCAAATGGTAGAGACTGGAAAACAGATGCTTGCCAG
Seq C2 exon
GGTGACTCAGGAGGGCCCCTGGTGTGTGAAGTAAATAACATCATGTTCCTATTTGGCATCATAAGCTGGGGAAAAGAGTGTGCAGAAAAAAATCAGCCCGGTGTTTACACACAAGTCAGCAACTACAATCAGTGGATCTCACAGCACACTGGTTTGCCTAGATATACAGCAGGCTCCAGGTACCCACAAAAGGACTAACTATGACTGAACAAATGCTTAGTGACTCAGGGTAATGTTTCAGCCTGCACAGAATGCACGTGCCAATTATTTATCCCATTCGCATTATATATGGCAGCTACCTCTTCAATCAATAGGAATAATCTTTAACAGTGCTGTAATCGTATTCATATATCGGACAGTGTTACTAGTGGTGTATATGAAGGATATGTAGAATGAGTGTACGACCATGTTTATAGCAATAAGCATGTTATAAGTGCTCCACAAAGGTACATTTGTTCATTTGGCTGGGCATTATGTTTGTTTGTTTTATTAATTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075265-'8-11,'8-9,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
PF0008921=Trypsin=FE(20.5=100)
C2:
PF0008921=Trypsin=PD(18.8=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGCGTGTCTTCCTCCT
R:
TAGGCAAACCAGTGTGCTGTG
Band lengths:
245-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]