BtaEX6105745 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005947 | PLAU
Description
Bos taurus plasminogen activator, urokinase (PLAU), mRNA. [Source:RefSeq mRNA;Acc:NM_174147]
Coordinates
chr28:29968640-29971029:+
Coord C1 exon
chr28:29968640-29968780
Coord A exon
chr28:29969126-29969274
Coord C2 exon
chr28:29969917-29971029
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTTTCCTCCATCCAGCTG
3' ss Score
10.21
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCTTGCTGAAGATCCGTACCAGCAGAGGCCAGTGTGCACAGCCCTCCCGGTCCATACAGACCATCTGCCTGCCCCCAGAACATGAAGATGCTCATTCTAGAACAAGGTGTGAGATCACTGGCTTCGGAAAAGAGAATCCCT
Seq A exon
CTGACTATCGCTACTCAGATGAGCTGAAAATGACTTTTGTGAGTCTGGTTTCCCATGAGGTGTGTCAGCAGCCCCACTACTATGGCGCTGAAGTCACTGACAAAATGCTATGTGCGGCTGACCCACAGTGGGAAACAGATTCCTGCCAG
Seq C2 exon
GGAGACTCAGGGGGCCCTCTGGTCTGTACCATCCAAGGCCGCCTGACCCTGACTGGGATTGTGAGCTGGGGCCGTGACTGTGCCATGAAGTACAAGCCAGGAGTCTACACAAGGGTCTCAAAATTCCTGCCCTGGATCAACACTCACACCAGGGGAGAGATTAACCTTGTCCTCTGAAGGACCCCAGAGAACCAAGGAAAGCACCACCCACTCCCATGCTGACCGTCATTTTTGCAGTAGGGCCAGCTGCACAGCTATATGTAAGGAAGAAACTGAGGAAGATGGACTCTGCAGAGGTGGTTTTGCTTGTGGTACCCCCAGGGTGAACGACAGTAGACTTAGCCTCACTAAGTCTACTTAATGAGTAGATATAGTCTGGGTGCTGGACGCCCAGATCCTTCCTGATCAGGATGGAAGGGTGGTCCTGAACCGGGATGGTATTGTCCATTTCTGGACTAAAGCTTCCTGGAGTTAAAAATGGCATCTCCTGTGCATAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005947-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.5=100)
A:
PF0008921=Trypsin=FE(20.3=100)
C2:
PF0008921=Trypsin=PD(18.7=76.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAGATCACTGGCTTCGG
R:
GGTGGTGCTTTCCTTGGTTCT
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]