GgaEX0006981 @ galGal3
Exon Skipping
Gene
ENSGALG00000005086 | F1NYX5_CHICK
Description
NA
Coordinates
chr6:16583891-16586393:-
Coord C1 exon
chr6:16586253-16586393
Coord A exon
chr6:16585942-16586090
Coord C2 exon
chr6:16583891-16585077
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTCTTTTCCTAGATG
3' ss Score
11.52
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CTTTAATAAGAATAAGAACAGCTTCTGGACAGTGTGCAGTAGAATCCAACTACGTCAGAACAGTCTGCTTGCCAGAGAAGAACCTTAACCTGTACGACAATACCTGGTGCGAAATAGCTGGCTATGGAAAACAGAACTCTT
Seq A exon
ATGATATTTACTATGCTCAAAGACTAATGTCGGCCACTGTAAACTTAATATCACAGGACGATTGCAAAAATAAATACTATGACAGTACCAGAGTTACTGACAACATGGTCTGTGCTGGAGACCCACTATGGGAAACAGATGCATGCAAG
Seq C2 exon
GGAGATTCTGGCGGCCCCATGGTCTGTGAGCACAATGGCAGGATGACGCTTTATGGGATTGTCAGCTGGGGAGATGGCTGTGCAAAGAAAAACAAGCCTGGAGTTTACACCAGGGTTACTCGCTACCTTAACTGGATTGACTCTAATATGAATGCAGTTTTCACCAAAAGTCGCTCTTTCCGTGAACCAAAGTGACCACTTGTGTACTTCTGGACTTGAATGACAATAAGACTGCAGTGATGCCAGGGCACCAAAGCCCTGAATGTCAGAGTTCTTGCTTTTAACTGATCGTGTAGTTTGCCACTACAGTGTTTCTGATGCAGAATTTGATACTATCTCACTACTCTTAATTACTGAAAACCACTCAATGGGAATCTAAAATATTTAACATTTAAATGAGTATTCCCATGCACAATACTGTACATATCAAGTTAACTGTCCACTTAATTTACAAACTGGCATTTGTTCTGGAAGTGTTGGTGAAGTTTTAAGTTATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005086-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.3=100)
A:
PF0008921=Trypsin=FE(20.1=100)
C2:
PF0008921=Trypsin=PD(18.4=69.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCTTCTGGACAGTGTGC
R:
AGGTAGCGAGTAACCCTGGTG
Band lengths:
253-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]