DreEX6070890 @ danRer10
Exon Skipping
Gene
ENSDARG00000039145 | plaub
Description
plasminogen activator, urokinase b [Source:ZFIN;Acc:ZDB-GENE-030619-15]
Coordinates
chr12:46766041-46770597:+
Coord C1 exon
chr12:46766041-46766181
Coord A exon
chr12:46767756-46767904
Coord C2 exon
chr12:46769659-46770597
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTTTTTTCATGTAGGGT
3' ss Score
9.97
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTCTGTTGAAGATTCGTGGTCCTGATGGCCGCTGTGCTAAAGAGTCGAGTTCAGTGAAGACGGTCTGCATTCCTGGACCCAACGTGTCGCTCAGTGATGGGACGTCCTGTACGGTGACGGGATACGGCAGAGAACATGAAG
Seq A exon
GGTCGTGGTTTTACTCTCAGTATCTCAAAGAAGCACAGGTCAAGATTTTGTCTCAGGATTTGTGTTCGAGTAAAGAGTATTATGGCAACATGATCACCGAGAACATGCTGTGTGCCGGCAGCCCAGACTGGAGCTCAGATGCCTGTAAG
Seq C2 exon
GGTGACTCTGGCGGGCCGCTGGTCTGTCGTGTCCAGGACCGAGTGTTTCTCTTCGGTGTGGTCAGCTGGGGTGAAGGATGCTCCAGAGCGTTTCGGCCTGGTGTTTATGCCAAAGTCAGCAACTACTACCACTGGATCCTGGAGAAGAGCGGCCTGACCTCACTCTCATGATCACACCCACACACACAGTTAACGTCTGAATTATTAGCCCCTCTGTATGTTTTTACCCAATTTCTGTTTAACAGAGAGAAGGTTTTTTCAACACATTTCTAAACATAATAGTTCTAACAACTGATTTATTTCATCTTTGCCATGATGACAGCACATAATAGACTAGATATTCTTAAAAGTACTAGTATTCAGCTGAAAGTGACATTTAAAGGCTTCACTAGGTTAATTAGGGTAAAGTTAGGGTAATTAGGCAAGTCTTTGTAAAGCAGTGATTTGTTCTGGAGACAATCCAAAACTAATATTGCTTAAGGGGGCTAATAATATTGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039145-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.3=100)
A:
PF0008921=Trypsin=FE(20.2=100)
C2:
PF0008921=Trypsin=PD(18.5=78.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACGGTCTGCATTCCTGG
R:
TCATGAGAGTGAGGTCAGGCC
Band lengths:
257-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]