MmuEX6039890 @ mm10
Exon Skipping
Gene
ENSMUSG00000021822 | Plau
Description
plasminogen activator, urokinase [Source:MGI Symbol;Acc:MGI:97611]
Coordinates
chr14:20840498-20843388:+
Coord C1 exon
chr14:20840498-20840638
Coord A exon
chr14:20840946-20841094
Coord C2 exon
chr14:20842274-20843388
Length
149 bp
Sequences
Splice sites
3' ss Seq
CATCTGTTTCTTCCATCTAGGTG
3' ss Score
11.85
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCTTGCTGAAGATACGTACCAGCACGGGCCAATGTGCACAGCCATCCAGGTCCATACAGACCATCTGCCTGCCCCCAAGGTTTACTGATGCTCCGTTTGGTTCAGACTGTGAGATCACTGGCTTTGGAAAAGAGTCTGAAA
Seq A exon
GTGACTATCTCTATCCAAAGAACCTGAAAATGTCCGTCGTAAAGCTTGTTTCTCATGAACAGTGTATGCAGCCCCACTACTATGGCTCTGAAATTAATTATAAAATGCTGTGTGCTGCGGACCCAGAGTGGAAAACAGATTCCTGCAAG
Seq C2 exon
GGCGATTCTGGAGGACCGCTTATCTGTAACATCGAAGGCCGCCCAACTCTGAGTGGGATTGTGAGCTGGGGCCGAGGATGTGCAGAGAAAAACAAGCCCGGTGTCTACACGAGGGTCTCACACTTCCTGGACTGGATTCAATCCCACATTGGAGAAGAGAAAGGTCTGGCCTTCTGATGGCCCTCAGGTAGCTGAGGGAAGAAACAGATGGGTCACTTGTTCCCATGCTGACCGTCCTCTCTGCAACAGAGTCGTCAAATGGAGGGAAGAAGCTGAAAAGACAGGTTTTGCATTGATCCTCTGCTGTGCTGCCCACCAGGGTGAGCGCCAATAGCATTACCCTCAGACACAGGCCTGGGTGCTGGCCATCCAGACCCTCCCGACCAGGATGGAAAGTTGGTCCTGACTCAGGATGCTATAGACCAGGAGTTGCCTTTTTATGGACTAAAGCCATCTGCAGTTTAGAAAACATCTCCTGGGCAAGTGTAGGAGGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021822-'7-11,'7-9,13-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.4=100)
A:
PF0008921=Trypsin=FE(20.2=100)
C2:
PF0008921=Trypsin=PD(18.6=76.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGTTTGGTTCAGACTGT
R:
TACCTGAGGGCCATCAGAAGG
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types