RnoEX0066649 @ rn6
Exon Skipping
Gene
ENSRNOG00000010516 | Plau
Description
plasminogen activator, urokinase [Source:RGD Symbol;Acc:3343]
Coordinates
chr15:3644769-3647121:-
Coord C1 exon
chr15:3646981-3647121
Coord A exon
chr15:3646537-3646685
Coord C2 exon
chr15:3644769-3645405
Length
149 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTTTCTTCCGCCTAGCTG
3' ss Score
7.8
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
CCTTGCTGAAGATACGTACCAGCACGGGCCAATGCGCACAGCCATCCAGGACCATACAGACCATCTGCCTGCCCCCGAGGTTTGGTGATGCTCCGTTTGGTTCAGACTGTGAGATCACTGGCTTCGGACAAGAGAGTGCCA
Seq A exon
CTGACTATTTCTATCCGAAGGACCTGAAAATGTCAGTTGTAAAGATTATTTCTCACGAACAGTGCAAGCAGCCTCACTACTATGGCTCTGAAATTAATTATAAAATGCTGTGTGCTGCTGACCCAGAGTGGAAAACAGATTCCTGCTCG
Seq C2 exon
GGAGATTCAGGAGGACCTCTTATCTGTAACATCGATGGCCGCCCAACTCTGAGCGGGATTGTGAGCTGGGGCAGTGGATGTGCAGAGAAAAACAAGCCTGGTGTCTACACGAGGGTCTCATACTTCCTGAACTGGATTCAGTCCCACATTGGAGAAGAGAATGGCCTAGCCTTCTGATGGTCCCCAGGCAGCTGGGGGAAGAAACGGATGGGTCGCCACTCATCCCCACGCTGACCGTCCTCTGCAGCAGGGTCATCTCCATCATGTGGAGGGAAGAGCTGAAGAAAACAGGCTCTGCACTGATTCTTTGCTTGTGCTGTCCACCAGGGTGAACCCCAATAGTATTACCCTCAGACACAGGTCTGGGTGCTGGCCATCCAGACCATCCTGACCAGGATGGAAATCAATCCTGACTCAAGATGAATAGATGGGGAGTTGCCTTTTTATGGACTAAAGCCATCTGCAGTTTAAAAACCCAAGTGTAGGAGGAGAGTTGGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010516-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.4=100)
A:
PF0008921=Trypsin=FE(20.2=100)
C2:
PF0008921=Trypsin=PD(18.6=76.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATACGTACCAGCACGGG
R:
AGACCCTCGTGTAGACACCAG
Band lengths:
252-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]