DreEX0056098 @ danRer10
Exon Skipping
Gene
ENSDARG00000088798 | plcxd1
Description
phosphatidylinositol-specific phospholipase C, X domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-131127-240]
Coordinates
chr6:37482375-37486869:-
Coord C1 exon
chr6:37486714-37486869
Coord A exon
chr6:37486027-37486207
Coord C2 exon
chr6:37482375-37483838
Length
181 bp
Sequences
Splice sites
3' ss Seq
ATTTCTGATTTTTCTGTCAGGAG
3' ss Score
7.04
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ACTGTATTAAAAGAGATCAGAGAGTGGTTGGATGTTCACCCAAAAGAAGTGGTCATCCTCTCATTTAGCCACTTCCTGGGCCTCAGTCAAGAGCTTCACTCATTGCTTGTCTCAACTATAAAGAGTGTTTTTGATTCTAAATTGTGCCCTAAAATG
Seq A exon
GAGCGTGTAACACTACGGAAATTATGGAGTGAGGGTCATCAAGTTATCGTTTCCTATGAGCACAATACTGCCAACTGCAACAGAGAATTGTGGTCCCATATACCTTATTGGTGGGCCAACAAGTCCAAAGCTGAAGCACTGATCGAGGAATTTGAGCGTAGGAAACAAAATGGCCGACCAG
Seq C2 exon
GCGGCTTCTTTGTGACTGGCATTAATCTTACTGAAGACCTGAAGTACATATGCTCCCATCCCACAGAATCACTGAAGGATATGGTAATGTCCACATACCCCACGTTACTCAGCTGGGTCAAGCAACAGAAGCCCGGCTCCAACACCGGCTCCCTCAACATCATAGCTGGAGACTTTGTTACAGAAAGCCAATTCATACCAACCGTCATTGCACTCAATGAAAATCTCCTCAACAGGACCATTTTACCACAACCTTGATGCTCTTTTATTAGTTTGCAAAATGTATTTAACATTGAAAAAATAGTGTTTCTTGTTCATGTTTTTTTAACACTAGTCAACTTTGCACTTTTTTATTAGGGTGCTTACACATTAGACTTTATGCTGCGTCACCGCCATTCATTTCAGTGATGGTGCATTGAAACAAGAGTTTGCTCCATCAACCAAAAGCACTTTCCACACCTGTCTGTCAAATCAGAGAGCTCTATCTAATGTGTAAGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088798_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(38.1=100)
A:
PF0038814=PI-PLC-X=PD(23.1=50.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCAGTCAAGAGCTTCAC
R:
TATGATGTTGAGGGAGCCGGT
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]