GgaEX0024729 @ galGal4
Exon Skipping
Gene
ENSGALG00000016721 | PLCXD1
Description
PI-PLC X domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001122109]
Coordinates
chr1:129423877-129431027:-
Coord C1 exon
chr1:129430872-129431027
Coord A exon
chr1:129426285-129426468
Coord C2 exon
chr1:129423877-129425671
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTTAACTTCCCTTAGGTG
3' ss Score
7.8
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GATATTCTGTGGGAAGTGTTAAAGTGGTTGGAAACTCATCCTCAGGAAGTTGTTATCCTGGCCTGCAGGAATTTTGATGGATTAACCAAGAAACTTCACTGTCATCTTATTACCTGTATAAAACAGATTTTCCAGTGTAAACTGTGTCCCAGAAAT
Seq A exon
GTGGTTCCAACTCTGCGGACCATGTGGCAGCGTGGCTATCAGGTTATAGTCTCATATGAAGAAGATCTGGAAGTGCTGAAGCACTGCGAGCTGTGGCCTGCAATCCCATACTGGTGGGGAAACAAAACTACCACTCATGCTCTCATCCAGTTTCTAGAACTCATGAAGCAGATGGGCCGTCCAG
Seq C2 exon
AAACATTCTTCGTTGCGGGGATTAACCTTACTGAAAATCTAAGATATATTCTTGTACACCCGTTTGGATCACTGAAGACAATGACACTCCGGAGTCTTCCATGCTTGAAAATCTGGGTGAGGAAGCAGTATCCAGGACCACAAAAAGAATGCATTAACATCATTGCTGGAGACTTCATAGGAAATGACGATTTTGTCAGAGATGTGATAGAACTTAACACAAAAATTAATCCTCAGTTAGACTGTCCCAGCAAAGGGTCTGGACCAAAGAGCATTTCATTCTCAGCTTTTTAAAAAATCTTTGAAAAGCTGAAAAGACTTTGTGTGCATTTAATATTTCCTGGTTTAAACACCCTGGACTACATAAAGATCCAGTGAAGTTAAACCAGGGATCATTAAGCTCATTAAGAAGCACGCTCTCAACATCATCAGGCTTTCAAAGTCTTTTCTTAAAAAAAGAGCAGGAAGATCTTGCTGAAGTCTTTAGAGAACTGTGAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016721_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(39.2=100)
A:
PF0038814=PI-PLC-X=PD(18.5=38.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTATCCTGGCCTGCAGG
R:
TGGATACTGCTTCCTCACCCA
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]