HsaEX1028457 @ hg38
Exon Skipping
Gene
ENSG00000182378 | PLCXD1
Description
phosphatidylinositol specific phospholipase C X domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23148]
Coordinates
chrX:291499-303353:+
Coord C1 exon
chrX:291499-291654
Coord A exon
chrX:293035-293218
Coord C2 exon
chrX:299097-303353
Length
184 bp
Sequences
Splice sites
3' ss Seq
TTAACTCTGGTCCTTTGCAGGAG
3' ss Score
9.7
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GACACACTCACGGAAATCTCGGAGTGGCTGGAGCGGCATCCACGCGAGGTGGTCATCCTGGCCTGCAGAAACTTCGAGGGGCTGAGCGAGGACCTGCACGAGTACCTGGTCGCCTGTATCAAGAACATCTTCGGGGACATGCTGTGTCCTCGTGGG
Seq A exon
GAGGTGCCGACACTGCGGCAGCTGTGGTCCCGGGGCCAACAGGTCATCGTCTCCTATGAAGACGAGAGCTCCTTGCGCCGGCACCACGAGCTGTGGCCAGGAGTCCCCTACTGGTGGGGAAACAGGGTGAAGACCGAGGCCCTCATCCGATACCTGGAGACCATGAAGAGCTGCGGCCGCCCAG
Seq C2 exon
GAGGGTTGTTCGTGGCCGGCATCAACCTCACGGAGAACCTGCAGTACGTTCTGGCGCACCCGTCCGAGTCCCTGGAGAAGATGACGCTGCCCAACCTTCCGCGGCTGAGCGCGTGGGTCCGAGAGCAGTGCCCGGGGCCGGGTTCACGGTGCACCAACATCATCGCGGGGGACTTCATCGGCGCAGACGGCTTCGTCAGTGACGTCATCGCGCTCAATCAGAAGCTGCTGTGGTGCTGACGGGACCCTTCTGAAGTTCGGGACGCGGCGGCTGCAGTTTCACCCCCGAATTTCCAAGTATTGTGACTTTGTTTGGGCCAAATGTTGGTGATCATAGGACCGATGATAATACGTTTTCATTTTCTTTAAAATAGAGATGGGGTGGCTGGGCGTGGTGACTTCGCCTGTCTTCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGCTTGAGAGCAGCCTGACCAACATGGTGAAATCCCATCTCTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182378-'28-22,'28-19,31-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PD(29.4=95.5)
A:
PF0038814=PI-PLC-X=PD(9.5=25.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAACTTCGAGGGGCTGAG
R:
ATGATGTTGGTGCACCGTGAA
Band lengths:
254-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains