GgaEX0024729 @ galGal3
Exon Skipping
Gene
ENSGALG00000016721 | Q5ZIV4_CHICK
Description
NA
Coordinates
chr1:134186576-134192491:-
Coord C1 exon
chr1:134192336-134192491
Coord A exon
chr1:134187749-134187932
Coord C2 exon
chr1:134186576-134187135
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTTAACTTCCCTTAGGTG
3' ss Score
7.8
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GATATTCTGTGGGAAGTGTTAAAGTGGTTGGAAACTCATCCTCAGGAAGTTGTTATCCTGGCCTGCAGGAATTTTGATGGATTAACCAAGAAACTTCACTGTCATCTTATTACCTGTATAAAACAGATTTTCCAGTGTAAACTGTGTCCCAGAAAT
Seq A exon
GTGGTTCCAACTCTGCGGACCATGTGGCAGCGTGGCTATCAGGTTATAGTCTCATATGAAGAAGATCTGGAAGTGCTGAAGCACTGCGAGCTGTGGCCTGCAATCCCATACTGGTGGGGAAACAAAACTACCACTCATGCTCTCATCCAGTTTCTAGAACTCATGAAGCAGATGGGCCGTCCAG
Seq C2 exon
AAACATTCTTCGTTGCGGGGATTAACCTTACTGAAAATCTAAGATATATTCTTGTACACCCGTTTGGATCACTGAAGACAATGACACTCCGGAGTCTTCCATGCTTGAAAATCTGGGTGAGGAAGCAGTATCCAGGACCACAAAAAGAATGCATTAACATCATTGCTGGAGACTTCATAGGAAATGACGATTTTGTCAGAGATGTGATAGAACTTAACACAAAAATTAATCCTCAGTTAGACTGTCCCAGCAAAGGGTCTGGACCAAAGAGCATTTCATTCTCAGCTTTTTAAAAAATCTTTGAAAAGCTGAAAAGACTTTGTGTGCATTTAATATTTCCTGGTTTAAACACCCTGGACTACATAAAGATCCAGTGAAGTTAAACCAGGGATCATTAAGCTCATTAAGAAGCACGCTCTCAACATCATCAGGCTTTCAAAGTCTTTTCTTAAAAAAAGAGCAGGAAGATCTTGCTGAAGTCTTTAGAGAACTGTGAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016721-'6-9,'6-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(39.2=100)
A:
PF0038814=PI-PLC-X=PD(18.5=38.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTATCCTGGCCTGCAGG
R:
TGGATACTGCTTCCTCACCCA
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event