MmuEX6019487 @ mm10
Exon Skipping
Gene
ENSMUSG00000064247 | Plcxd1
Description
phosphatidylinositol-specific phospholipase C, X domain containing 1 [Source:MGI Symbol;Acc:MGI:2685422]
Coordinates
chr5:110102176-110103815:+
Coord C1 exon
chr5:110102176-110102331
Coord A exon
chr5:110102446-110102629
Coord C2 exon
chr5:110103395-110103815
Length
184 bp
Sequences
Splice sites
3' ss Seq
CCATGCCCCTCCCCACCCAGGAA
3' ss Score
8.58
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACACCCTCACTGAGATAGCTGAGTGGCTGCAATCACACCCCCGCGAGGTGGTCATCTTGGCTTGCAGGAACTTCGAGGGGATGACTTGTGAGTTGCACGACTATCTCGCGGGCTGCATCGTGAACATTTTTGGAGACATGCTGTGTCCCAGTGGG
Seq A exon
GAAGTCCCCACACTGAGGCAGCTATGGGCACGAGAGCAGCAGGTCATCGTGTCCTACGAGGATGAGGCCACAGTCAGCCGTTATGATCAGCTGTGGCCTGCGATCCCATATTGGTGGGGAAATGCAGTGAAGACAGATGTGCTGCTGCGGTTCCTGGAGACCATGAAGGGCCAAGGCCGCCCAG
Seq C2 exon
ATGGTCTGTTCGTTGCTGGGATCAACATCACTGAGAACCTGTGCTACATCCTCCTGCACCCAGTGGACTCCCTGGAGGAGATGACACGTCGCAGCCTCCCCCTCATGACCGAGTGGGTGTGTGCACAGCAGCCGGGGCAGAGCCCTCAATGCACCAACATCATCGCAGGCGACTTCGTGGATGCGGATGGCTTCGTGAGTAAGGTCATCAGCCTGAATTGCAAACTGCTGTCTCCCTAACTGCCACATCCCCAAGACGGGGGTCACCACTTCGGAGACCTTCAGACCCAGCAGGCCAGGGCCCAGAATGTTCTGCTGTCATGATGCTGTTGCAGAACACATGGTGGCCACGTATGTGTCACTTCTGTTCGCATCACCAGGTGCTCAGGCCTCCATTGATGAACGGATTTTGAACTAACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064247-'7-12,'7-10,18-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(29.5=100)
A:
PF0038814=PI-PLC-X=PD(11.6=32.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGGGGATGACTTGTGAGT
R:
ATGTTGGTGCATTGAGGGCTC
Band lengths:
243-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types