DreEX0057068 @ danRer10
Exon Skipping
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50465387-50467337:+
Coord C1 exon
chr5:50465387-50465493
Coord A exon
chr5:50465587-50465637
Coord C2 exon
chr5:50467191-50467337
Length
51 bp
Sequences
Splice sites
3' ss Seq
AGTGTTATTTATCTGTTTAGCGT
3' ss Score
6.46
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTTTGATGAGGTTTATTATGGACAGTTCCTGTCATTGTACATGAAGCAGGTTTTTTTCATAGATGAAAGCGGTCCTCCTTTTGGACACATGATACTTGCTTTAGGAG
Seq A exon
CGTATTTAGGAGGATTTGATGGCAACTTTGTTTGGAACAGAATTGGAGCAG
Seq C2 exon
AATACCCTGGTAATGTCCCTGTTTGGAGCCTTCGACTGATACCGGCTCTGGCAGGCTCTTTTTGTGTGCCACTTGCATATCTTGTAGTAGTGGAGCTGGGATACTCCCACTTCTCGGCACTGGGGGCCTGTGCACTTCTCCTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670-'2-5,'2-3,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(14.8=100)
A:
PF0236613=PMT=FE(7.0=100)
C2:
PF0236613=PMT=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGCGGTCCTCCTTTTGG
R:
TCCCAGCTCCACTACTACAAGA
Band lengths:
145-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]