GgaEX0004979 @ galGal4
Exon Skipping
Gene
ENSGALG00000003757 | POMT1
Description
protein O-mannosyl-transferase 1 [Source:RefSeq peptide;Acc:NP_001025856]
Coordinates
chr17:6223161-6224414:+
Coord C1 exon
chr17:6223161-6223267
Coord A exon
chr17:6223867-6223917
Coord C2 exon
chr17:6224268-6224414
Length
51 bp
Sequences
Splice sites
3' ss Seq
AATTGTTGCTTATGTTGTAGGTT
3' ss Score
7.44
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
TTTTGATGAAGTTTATTACGGCCAATTTGTTTCCCTCTACATGAAGAGAATCTTCTTTGTGGATGACAGCGGCCCACCGCTTGGCCATATGCTGCTGGCTTTGGGAG
Seq A exon
GTTACTTAGGAGGATTTGATGGAAACTTCTTATGGAACAGGATTGGAGCTG
Seq C2 exon
AATACAGCATGAACGTTCCTGTGTGGTCCTTGCGGTTCCTGCCAGCACTGGCTGGTGCTCTCTGCATCCCCTTAGCATACCAGATTTTGGTAGAGCTGCAGTTCTCCCACTGTGCTGCGCTTGGAGCTGCTCTTCTGATTCTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(14.5=100)
A:
PF0236613=PMT=FE(6.9=100)
C2:
PF0236613=PMT=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATATGCTGCTGGCTTTGGGA
R:
AGTGGGAGAACTGCAGCTCTA
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]