MmuEX6100511 @ mm10
Exon Skipping
Gene
ENSMUSG00000039254 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:MGI Symbol;Acc:MGI:2138994]
Coordinates
chr2:32240427-32241799:+
Coord C1 exon
chr2:32240427-32240533
Coord A exon
chr2:32240665-32240715
Coord C2 exon
chr2:32241653-32241799
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCCAAATGTTTTGTTTTAGGTT
3' ss Score
10.86
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTTCGATGAAGTATATTATGGGCAGTACATTTCCTTCTACATGAAGCGCATCTTCTTTCTGGATGACAGTGGGCCACCATTTGGCCACATGCTACTGGCCTTAGGAG
Seq A exon
GTTGGTTAGGGGGATTCGATGGTAACTTTCTGTGGAACCGAATTGGAGCAG
Seq C2 exon
AGTACAGTAGCAATGTGCCTATATGGTCCTTACGCCTGCTGCCAGCGCTTGCCGGGGCCCTGTCAGTGCCCATGGCCTACCAGATAGTGCTAGAGCTCCACTTTTCCCACGGTGCTGCCATTGGAGCCGCCCTGCTGATGCTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039254-'10-8,'10-7,12-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(14.5=100)
A:
PF0236613=PMT=FE(13.2=100)
C2:
PF0236613=PMT=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACATGCTACTGGCCTTAG
R:
CCGTGGGAAAAGTGGAGCTC
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types