DreEX0058748 @ danRer10
Exon Skipping
Gene
ENSDARG00000061830 | prss12
Description
protease, serine, 12 (neurotrypsin, motopsin) [Source:ZFIN;Acc:ZDB-GENE-090313-45]
Coordinates
chr1:19413530-19436749:+
Coord C1 exon
chr1:19413530-19413671
Coord A exon
chr1:19424390-19424468
Coord C2 exon
chr1:19436451-19436749
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTAATACATTTCAGAGG
3' ss Score
6.88
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTTTACCTGTGAGGCTGGTGGGCGGAGAGAATGAGAGAGAGGGGCGTGTAGAGATCCTGGTGGGTGGCCAGTGGGGGACGGTGTGCGATGATGGATGGACGGATCGGGACGCAGAAGTGGTGTGCAGACAGCTGGGTTACAG
Seq A exon
AGGCAGTTGGCTCCATGTGTGGTCTAAGACTCTCTCACACACGTCAGAAGAGAATTATAGGAGGAGAAAACTCTCTACG
Seq C2 exon
GTATGGGAACAGCACAGGGCTGTATAAAGTTCGTGTTGGTGATTATCACTCTCTGGTCCCTGAGGAGTATGAGGAAGAGTATGCCGTGGAGAAGATCGTCCTTCACCCACGCTACCATGCAGACAGTAGTGACTATGACCTGGCACTTCTGCGTGTTTCTGGACACAGAGCTCACAGGGGTGTCACGGGCCAATGCGTCACACTGAGCCGATCAGTGCTGCCCGCTTGTTTACCAGTGCGGAGAGAGAAAGTGCCAAAGGGCATTGCCAACTGCTACATCACAGGCTGGGGAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061830_MULTIEX2-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0008921=Trypsin=PU(3.3=29.6)
C2:
PF0008921=Trypsin=FE(40.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATGAGAGAGAGGGGCGT
R:
CTCCTCAGGGACCAGAGAGTG
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]