RnoEX6011414 @ rn6
Exon Skipping
Gene
ENSRNOG00000015353 | Prss12
Description
serine protease 12 [Source:RGD Symbol;Acc:69238]
Coordinates
chr2:227697635-227702229:+
Coord C1 exon
chr2:227697635-227697840
Coord A exon
chr2:227700162-227700240
Coord C2 exon
chr2:227702107-227702229
Length
79 bp
Sequences
Splice sites
3' ss Seq
AACCCCCTCTCTACTTTCAGAGA
3' ss Score
10.02
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGGTCCGGCCAGGGCGAGGACCATGGCTTATTTTGGGGAAGGAAAAGGCCCCATCCACATGGACAATGTGAAGTGCACAGGGAATGAGAAGGCCCTGGCCGACTGCGTCAAACAAGACATCGGAAGGCACAACTGCCGCCACAGTGAGGACGCAGGAGTCATCTGTGACTATTACGAGAAAAAAACATCAGGTCATGGGAATAAAG
Seq A exon
AGACCCTCTCATCTGGGTGTGGATTGAGATTACTACACCGCCGACAGAAACGGATCATTGGTGGGAACAATTCTTTAAG
Seq C2 exon
GGGTGCCTGGCCTTGGCAGGCTTCCCTCAGGCTGAAGTCGACCCACGGAGATGGCAGGCTGCTCTGTGGAGCCACCCTTCTAAGTAGCTGCTGGGTCCTGACAGCTGCGCACTGTTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015353-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=80.0)
A:
PF0008921=Trypsin=PU(3.3=29.6)
C2:
PF0008921=Trypsin=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATCGGAAGGCACAACTG
R:
GCAGCTACTTAGAAGGGTGGC
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]