GgaEX6035083 @ galGal3
Exon Skipping
Gene
ENSGALG00000012004 | F1NH25_CHICK
Description
NA
Coordinates
chr4:56597453-56600532:+
Coord C1 exon
chr4:56597453-56597658
Coord A exon
chr4:56598320-56598398
Coord C2 exon
chr4:56600410-56600532
Length
79 bp
Sequences
Splice sites
3' ss Seq
TATCTCCTCTTCTGTCTTAGATT
3' ss Score
10.62
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
AGGTCCAGCAAGAGCAAGGACAATGGCATATTTTGGGGAAGGCAAAGGCCCAATCCACGTGGATAATGTAAAATGTACTGGAAGTGAGAGATCCTTGGCAGACTGCATTAAGCAGGACATTGGAACACACAACTGCCGTCACAGTGAGGATGCAGGCGTCATCTGTGACCACCTAGGCAAGAAGGTCCCTGGGAACAGCAACAAAG
Seq A exon
ATTCTCTTGCTTCTGTTTGTGGATTGAGGTTACTACATCGTCGACAAAAGCGAATAATTGGTGGGAAAAATTCTTTACG
Seq C2 exon
GGGCGGTTGGCCATGGCAGGTTGCACTCCGATTTAAATCGTCTCATGGAGATGGAAGACTCTTGTGTGGTGCTACTCTCATTAGTAGCTGCTGGGTCCTCACTGCTGCACACTGCTTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012004-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=80.0)
A:
PF0008921=Trypsin=PU(4.9=29.6)
C2:
PF0008921=Trypsin=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGTGAGGATGCAGGC
R:
GTGAGGACCCAGCAGCTACTA
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]