DreEX0060386 @ danRer10
Exon Skipping
Gene
ENSDARG00000061757 | rabgap1l
Description
RAB GTPase activating protein 1-like [Source:ZFIN;Acc:ZDB-GENE-050208-389]
Coordinates
chr22:17385340-17404037:+
Coord C1 exon
chr22:17385340-17385483
Coord A exon
chr22:17393869-17393910
Coord C2 exon
chr22:17403909-17404037
Length
42 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAATTTCTTCACAGGGA
3' ss Score
9.78
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAGCTGCTGCCGGACCTGTGGTCTCACTTCCAGGAGCTGAACTTGGAGGCTCACATGTACGCATCCCAGTGGTTCCTAACACTGTTTACCGCCAAGTTCCCTCTCTGCATGGTCTTCCATATCACCGACCTGCTCCTGTGCGAG
Seq A exon
GGATTGAACATCATCTTCAATGTGGCGCTGGCTCTCCTTAAG
Seq C2 exon
ACCTCCAAGGAAGACCTGCTGCAGGCTGATTTCGAGGGTGCGCTGAAATTTTTCCGGGTCCAACTCCCGAAACGCTACAGGGCAGCAGAAAACGCTCGACGCCTTATGGAGCAAGCCTGCAATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061757_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.0=100)
A:
PF0056613=RabGAP-TBC=FE(6.4=100)
C2:
PF0056613=RabGAP-TBC=PD(2.9=14.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCCCAGTGGTTCCTAAC
R:
GACCCGGAAAAATTTCAGCGC
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]