DreEX0060859 @ danRer10
Exon Skipping
Gene
ENSDARG00000079872 | rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
Coordinates
chr9:2965223-2969755:-
Coord C1 exon
chr9:2969695-2969755
Coord A exon
chr9:2967597-2967673
Coord C2 exon
chr9:2965223-2965369
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATGGATGTGTTGTGCTGCAGTGT
3' ss Score
5.34
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTGAAGAGGGAACTCGCTGGTGTTTTAATATTTGAGTCGCATGCGAAAGCAGGCACAGTGT
Seq A exon
TGTTCAATCAGGGTGAAGAAGGGACGTCCTGGTACATCATCCTGAAGGGCTCCGTCAATGTGGTCATCTATGGAAAG
Seq C2 exon
GGTGTGGTGTGTACTCTACATGAGGGTGATGATTTCGGGAAGCTGGCTCTGGTGAATGACGCTCCTCGGGCCGCCTCCATCGTGCTGAGAGAAGACTTCTGCCACTTCCTCAGGGTGGATAAAGAAGACTTCAACAGAATCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079872_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(10.3=42.9)
A:
PF0002724=cNMP_binding=FE(28.7=100)
C2:
PF0002724=cNMP_binding=FE(55.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAACTCGCTGGTGTTTTA
R:
TATCCACCCTGAGGAAGTGGC
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]