GgaEX6042286 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18801396-18804376:-
Coord C1 exon
chr7:18804316-18804376
Coord A exon
chr7:18802579-18802655
Coord C2 exon
chr7:18801396-18801542
Length
77 bp
Sequences
Splice sites
3' ss Seq
AACTTTTCTCTCTTTTGTAGTAT
3' ss Score
8.97
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTAAAGAGAGAATTAGCAGGTGTCCTCATTTTTGAGTCGCATCCCAAAGCTGGAACAGTCT
Seq A exon
TATTTAATCAGGGAGAAGAAGGTACTTCTTGGTACATTATCCTAAAGGGATCAGTAAACGTAGTCATTTATGGCAAG
Seq C2 exon
GGTGTGGTATGTACTCTACATGAAGGAGATGATTTTGGCAAGCTAGCACTTGTGAATGATGCTCCCAGAGCAGCATCTATTGTTCTACGTGAAGACAACTGCCACTTCTTGAGAGTAGACAAAGAGGACTTCAACAGAATCCTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'19-22,'19-20,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(10.3=42.9)
A:
PF0002724=cNMP_binding=FE(28.7=100)
C2:
PF0002724=cNMP_binding=FE(55.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGTCGCATCCCAAAGCTG
R:
AGGATTCTGTTGAAGTCCTCTTTGT
Band lengths:
173-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]