DreEX0060973 @ danRer10
Exon Skipping
Gene
ENSDARG00000029372 | rasa4
Description
RAS p21 protein activator 4 [Source:ZFIN;Acc:ZDB-GENE-060526-349]
Coordinates
chr5:58691895-58696394:+
Coord C1 exon
chr5:58691895-58691959
Coord A exon
chr5:58693783-58693895
Coord C2 exon
chr5:58696202-58696394
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTTCATTTTCTCCCGGCAGGTG
3' ss Score
12.84
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CTGAACCCAACACACTCTTCCGCAGTAATTCATTAGCATCTAAGTCTATGGAATCCTTTTTGAAG
Seq A exon
GTGGCTGGGATGCAGTATCTGCACCGGCTTCTGGGGCCCATAATAAACCGAATCTTTGAAGAGAAGAAATACGTAGAACTGGACCCCAGTAAAGTAGAACTGAAAGAAGCAGG
Seq C2 exon
GTGTGCAGGTTTGCACCGTCAGCAGACAGAATCTGATGTTATTCAGCAGAGCTCCAGCCTCCTTCAGTCATACCTGTCTGAGCTTCTCACCTCCATCCTACAGTCTGCATCCTACTGCCCGCTGCTCATCTGCCAGGTTTTCCATCAGCTCTACCTGCGAGTGCAGGAGCGCTTCCCGGACCCAGAGTACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029372-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
PF0061614=RasGAP=FE(19.5=100)
C2:
PF0061614=RasGAP=FE(33.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCCAACACACTCTTCCG
R:
GGTACTCTGGGTCCGGGAAG
Band lengths:
255-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]