RnoEX0074203 @ rn6
Exon Skipping
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23606639-23607424:-
Coord C1 exon
chr12:23607360-23607424
Coord A exon
chr12:23607010-23607122
Coord C2 exon
chr12:23606639-23606831
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGCTTTATGGTGGCCCTCAGGTG
3' ss Score
8.4
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTGAGGCCAACACCCTCTTCCGGAGCAATTCTCTGGCCTCAAAGTCCATGGAATCCTTTCTGAAG
Seq A exon
GTGGCAGGGATGCGCTATCTGCATGGCATCCTGGGCCCCATCATTGACAGAGTGTTCGAGGAGAAGAAGTATGTGGAGCTGGACCCCAGCAAAGTGGAAGTTAAGGATGTAGG
Seq C2 exon
GTGCTCTGGGCTGCACCGCCCACAGACGGAGGCTGAAGTGTTAGAGCAGAGCGCACAGACGCTGCGTGCCCACTTGGTGGCGCTGCTGAGCGCCATATGCCGCTCGGTTCGCACCTGTCCAGCTGTGGTCCGCGCCACTTTTCGGCAGCTGTTCAGGCGCGTGCGGGAGCGCTTCCCCAGCGCCCAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431-'19-19,'19-18,23-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.008
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
PF0061614=RasGAP=FE(19.5=100)
C2:
PF0061614=RasGAP=FE(33.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCAACACCCTCTTCCG
R:
CACGCGCCTGAACAGCTG
Band lengths:
226-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]